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gabD gabD gabT gabT sdhA sdhA PFL_4884 PFL_4884 PFL_5009 PFL_5009 yneI yneI sdhB sdhB hpaI hpaI PFL_0112 PFL_0112 sdhD sdhD sdhC sdhC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
gabDSuccinate-semialdehyde dehydrogenase; Identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780; Belongs to the aldehyde dehydrogenase family. (480 aa)    
Predicted Functional Partners:
gabT
4-aminobutyrate transaminase; Identified by match to protein family HMM PF00202; match to protein family HMM TIGR00700; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.977
sdhA
Succinate dehydrogenase, flavoprotein subunit; Identified by similarity to SP:P10444; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM TIGR01812; match to protein family HMM TIGR01816; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 0.926
PFL_4884
Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.919
PFL_5009
Putative 4-aminobutyrate transaminase; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 0.919
yneI
Succinate semialdehyde dehydrogenase, NAD+-dependent; Identified by similarity to SP:P76149; match to protein family HMM PF00171.
  
  
 
0.914
sdhB
Succinate dehydrogenase, iron-sulfur protein; Identified by similarity to SP:P07014; match to protein family HMM TIGR00384.
   
 
 0.913
hpaI
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Identified by similarity to SP:Q47098; match to protein family HMM PF03328; match to protein family HMM TIGR02311; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.908
PFL_0112
Succinate CoA transferase; Identified by similarity to SP:P38946; match to protein family HMM PF02550; match to protein family HMM TIGR03458.
  
 
 0.907
sdhD
Succinate dehydrogenase, hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
   
 
 0.905
sdhC
Succinate dehydrogenase, cytochrome b556 subunit; Identified by similarity to SP:P10446; match to protein family HMM PF01127; match to protein family HMM TIGR02970.
   
 
  0.904
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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