STRINGSTRING
sbp sbp cysT cysT cysW cysW cysA cysA cysN cysN cysNC cysNC cysD-2 cysD-2 cysD-3 cysD-3 PFL_2219 PFL_2219 sbp2 sbp2 PFL_0191 PFL_0191
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
sbpSulfate ABC transporter, periplasmic sulfate-binding protein; Identified by similarity to SP:P0AG78; match to protein family HMM PF01547; match to protein family HMM TIGR00971. (336 aa)    
Predicted Functional Partners:
cysT
Sulfate ABC transporter, permease protein CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
 
 0.997
cysW
Sulfate ABC transporter, permease protein CysW; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140.
 
 
 0.997
cysA
Sulfate ABC transporter, ATP-binding protein CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
 
 
 0.997
cysN
Putative sulfate adenylyltransferase, large subunit/adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
 
 0.991
cysNC
Sulfate adenylyltransferase, large subunit/adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family.
  
 
 0.991
cysD-2
Sulfate adenylyltransferase, small subunit; Identified by similarity to SP:P21156; match to protein family HMM PF01507; match to protein family HMM TIGR02039.
 
 
 0.905
cysD-3
Sulfate adenylyltransferase, small subunit; Identified by match to protein family HMM PF01507; match to protein family HMM TIGR02039.
 
 
 0.905
PFL_2219
Conserved hypothetical protein; Identified by similarity to GB:ABR57225.1.
     
 0.904
sbp2
Periplasmic sulfate-binding protein; Identified by similarity to SP:P0AG78; match to protein family HMM PF01547; match to protein family HMM TIGR00971.
  
  
 
0.903
PFL_0191
Conserved hypothetical protein.
  
  
 0.669
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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