atsC protein (Pseudomonas protegens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

atsC

Sulfate ester ABC transporter, ATP-binding protein AtsC; Identified by similarity to GB:AAD31787.1; match to protein family HMM PF00005. (271 aa)

Predicted Functional Partners:

atsB

0.992

atsR

0.972

PFL_3179

0.970

PFL_3178

0.969

ssuC2

0.967

ssuC

0.965

PFL_1387

0.943

PFL_2552

0.942

ssuA

0.941

PFL_1382

0.938

Your Current Organism:

Pseudomonas protegens

NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFL_1382	PFL_3178	PFL_1382	PFL_3178	ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family; Identified by match to protein family HMM TIGR01409.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.967
PFL_1382	PFL_3179	PFL_1382	PFL_3179	ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family; Identified by match to protein family HMM TIGR01409.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.967
PFL_1382	atsB	PFL_1382	PFL_0207	ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family; Identified by match to protein family HMM TIGR01409.	Sulfate ester ABC transporter, permease protein AtsB; Identified by similarity to GB:AAD31786.2; match to protein family HMM PF00528.	0.967
PFL_1382	atsC	PFL_1382	PFL_0206	ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family; Identified by match to protein family HMM TIGR01409.	Sulfate ester ABC transporter, ATP-binding protein AtsC; Identified by similarity to GB:AAD31787.1; match to protein family HMM PF00005.	0.938
PFL_1382	ssuC	PFL_1382	PFL_5935	ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family; Identified by match to protein family HMM TIGR01409.	Aliphatic sulfonates ABC transporter, permease protein; Identified by similarity to GB:AAC31906.1; match to protein family HMM PF00528.	0.970
PFL_1382	ssuC2	PFL_1382	PFL_1377	ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family; Identified by match to protein family HMM TIGR01409.	Aliphatic sulfonates ABC transporter, permease protein; Identified by similarity to SP:P75851; match to protein family HMM PF00528.	0.983
PFL_1387	PFL_3178	PFL_1387	PFL_3178	Alkanesulfonate ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P75853; match to protein family HMM TIGR01728.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.967
PFL_1387	PFL_3179	PFL_1387	PFL_3179	Alkanesulfonate ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P75853; match to protein family HMM TIGR01728.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.968
PFL_1387	atsB	PFL_1387	PFL_0207	Alkanesulfonate ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P75853; match to protein family HMM TIGR01728.	Sulfate ester ABC transporter, permease protein AtsB; Identified by similarity to GB:AAD31786.2; match to protein family HMM PF00528.	0.967
PFL_1387	atsC	PFL_1387	PFL_0206	Alkanesulfonate ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P75853; match to protein family HMM TIGR01728.	Sulfate ester ABC transporter, ATP-binding protein AtsC; Identified by similarity to GB:AAD31787.1; match to protein family HMM PF00005.	0.943
PFL_1387	ssuC	PFL_1387	PFL_5935	Alkanesulfonate ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P75853; match to protein family HMM TIGR01728.	Aliphatic sulfonates ABC transporter, permease protein; Identified by similarity to GB:AAC31906.1; match to protein family HMM PF00528.	0.970
PFL_1387	ssuC2	PFL_1387	PFL_1377	Alkanesulfonate ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P75853; match to protein family HMM TIGR01728.	Aliphatic sulfonates ABC transporter, permease protein; Identified by similarity to SP:P75851; match to protein family HMM PF00528.	0.974
PFL_2552	PFL_3178	PFL_2552	PFL_3178	ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF04069; match to protein family HMM TIGR01728.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.967
PFL_2552	PFL_3179	PFL_2552	PFL_3179	ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF04069; match to protein family HMM TIGR01728.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.967
PFL_2552	atsB	PFL_2552	PFL_0207	ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF04069; match to protein family HMM TIGR01728.	Sulfate ester ABC transporter, permease protein AtsB; Identified by similarity to GB:AAD31786.2; match to protein family HMM PF00528.	0.968
PFL_2552	atsC	PFL_2552	PFL_0206	ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF04069; match to protein family HMM TIGR01728.	Sulfate ester ABC transporter, ATP-binding protein AtsC; Identified by similarity to GB:AAD31787.1; match to protein family HMM PF00005.	0.942
PFL_2552	ssuC	PFL_2552	PFL_5935	ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF04069; match to protein family HMM TIGR01728.	Aliphatic sulfonates ABC transporter, permease protein; Identified by similarity to GB:AAC31906.1; match to protein family HMM PF00528.	0.976
PFL_2552	ssuC2	PFL_2552	PFL_1377	ABC transporter, substrate-binding protein, QAT family; Identified by match to protein family HMM PF04069; match to protein family HMM TIGR01728.	Aliphatic sulfonates ABC transporter, permease protein; Identified by similarity to SP:P75851; match to protein family HMM PF00528.	0.975
PFL_3178	PFL_1382	PFL_3178	PFL_1382	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family; Identified by match to protein family HMM TIGR01409.	0.967
PFL_3178	PFL_1387	PFL_3178	PFL_1387	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Alkanesulfonate ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P75853; match to protein family HMM TIGR01728.	0.967

page 1 of 4

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About