STRINGSTRING
atsK atsK tauA tauA tauB tauB PFL_4656 PFL_4656 PFL_2967 PFL_2967 sftR sftR sftP sftP PFL_0209 PFL_0209 PFL_2924 PFL_2924 lsfA lsfA atsR atsR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atsKAlkylsulfatase AtsK; Identified by similarity to GB:AAD31784.1; match to protein family HMM PF02668. (301 aa)    
Predicted Functional Partners:
tauA
Taurine ABC transporter, periplasmic taurine-binding protein; Identified by similarity to SP:Q47537; match to protein family HMM PF04069; match to protein family HMM PF09084; match to protein family HMM TIGR01729.
 
  
 0.800
tauB
Taurine ABC transporter, ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
 
  
 0.686
PFL_4656
AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00668.
  
  
 0.589
PFL_2967
Conserved hypothetical protein.
  
     0.577
sftR
Transcriptional regulator SftR; Identified by similarity to GB:AAD31783.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
   
  
 0.533
sftP
TonB-dependent outermembrane receptor SftP; Receptor Kahnert et al. 2002; identified by similarity to GB:AAF02095.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
  
  
 0.527
PFL_0209
Transcriptional regulator SftR-related protein; Identified by similarity to GB:AAD31783.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
       0.515
PFL_2924
Conserved hypothetical protein.
 
    0.501
lsfA
Thiol-specific antioxidant protein LsfA; Identified by similarity to GB:ABJ12706.1; match to protein family HMM PF00578; match to protein family HMM PF08534.
  
  
 0.500
atsR
Sulfate ester ABC transporter, periplasmic sulfate ester-binding protein AtsR; Identified by similarity to GB:AAD31785.1; match to protein family HMM PF09084.
 
    0.495
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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