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tonB2 tonB2 exbD2 exbD2 exbB2 exbB2 sftP sftP exbD6 exbD6 exbB6 exbB6 exbB1 exbB1 PFL_0255 PFL_0255 PFL_0147 PFL_0147 fetA fetA PFL_2240 PFL_2240
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tonB2TonB2 protein; See Shirley and Lamont (PMID: 19592589) for more information; identified by similarity to SP:Q9RMT3; match to protein family HMM PF03544; match to protein family HMM TIGR01352. (271 aa)    
Predicted Functional Partners:
exbD2
TonB system transport protein ExbD2; Identified by match to protein family HMM PF02472.
 
 
 0.955
exbB2
TonB system transport protein ExbB2; Identified by match to protein family HMM PF01618.
 
 
 0.941
sftP
TonB-dependent outermembrane receptor SftP; Receptor Kahnert et al. 2002; identified by similarity to GB:AAF02095.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 0.735
exbD6
TonB system transport protein ExbD6; Identified by match to protein family HMM PF02472.
 
 
 0.726
exbB6
TonB system transport protein ExbB6; Identified by match to protein family HMM PF01618.
 
 
 0.712
exbB1
TonB system transport protein ExbB1; Identified by match to protein family HMM PF01618; match to protein family HMM TIGR02797.
  
 
 0.709
PFL_0255
TonB-dependent outermembrane receptor; Receptor; identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 0.703
PFL_0147
TonB-dependent outermembrane ferrichrome receptor; Transducer; identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783.
  
 
 0.699
fetA
TonB-dependent outermembrane enantio-pyochelin receptor; Receptor Hoegy et al. 2009; identified by similarity to GP:27502149; match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.
  
 
 0.699
PFL_2240
TonB-dependent outermembrane receptor; Receptor; identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
 
 
 0.683
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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