STRINGSTRING
exbB2 exbB2 exbD2 exbD2 tonB2 tonB2 exbD6 exbD6 tolR tolR exbD4 exbD4 exbD1 exbD1 tolB tolB pal pal lolE lolE PFL_1777 PFL_1777
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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[Homology]
Score
exbB2TonB system transport protein ExbB2; Identified by match to protein family HMM PF01618. (241 aa)    
Predicted Functional Partners:
exbD2
TonB system transport protein ExbD2; Identified by match to protein family HMM PF02472.
 
 
 0.980
tonB2
TonB2 protein; See Shirley and Lamont (PMID: 19592589) for more information; identified by similarity to SP:Q9RMT3; match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
 0.941
exbD6
TonB system transport protein ExbD6; Identified by match to protein family HMM PF02472.
 
 
 0.899
tolR
TolR protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.885
exbD4
TonB system transport protein ExbD4; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.880
exbD1
TonB system transport protein ExbD1; Identified by match to protein family HMM PF02472; match to protein family HMM TIGR02803.
 
 
 0.880
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.730
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.699
lolE
Lipoprotein-releasing system, transmembrane protein LolE; Identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212.
 
    0.622
PFL_1777
Transport energizing protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
 
 
 0.620
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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