STRINGSTRING
exbD2 exbD2 exbB2 exbB2 tonB2 tonB2 exbB1 exbB1 tolQ tolQ exbB4 exbB4 tonB3 tonB3 exbB5 exbB5 exbB6 exbB6 pal pal PFL_1776 PFL_1776
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Experiments
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[Homology]
Score
exbD2TonB system transport protein ExbD2; Identified by match to protein family HMM PF02472. (133 aa)    
Predicted Functional Partners:
exbB2
TonB system transport protein ExbB2; Identified by match to protein family HMM PF01618.
 
 
 0.980
tonB2
TonB2 protein; See Shirley and Lamont (PMID: 19592589) for more information; identified by similarity to SP:Q9RMT3; match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
 0.955
exbB1
TonB system transport protein ExbB1; Identified by match to protein family HMM PF01618; match to protein family HMM TIGR02797.
 
 
 0.929
tolQ
TolQ protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.896
exbB4
TonB system transport protein ExbB4; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.891
tonB3
Type IV pilus associated protein TonB3; See Shirley and Lamont (PMID: 19592589) for more information; identified by similarity to GB:AAG03795.1; match to protein family HMM TIGR01352.
  
 
 0.826
exbB5
TonB system transport protein ExbB5; Identified by match to protein family HMM PF01618.
 
 
 0.801
exbB6
TonB system transport protein ExbB6; Identified by match to protein family HMM PF01618.
 
 
 0.765
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 
 0.706
PFL_1776
Transporter, MotA/TolQ/ExbB proton channel family; Identified by match to protein family HMM PF01618.
 
 
 0.676
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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