STRINGSTRING
PFL_0492 PFL_0492 PFL_0491 PFL_0491 PFL_0493 PFL_0493 ftsZ ftsZ PFL_2076 PFL_2076 PFL_0490 PFL_0490 ubiH ubiH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0492Conserved hypothetical protein; Identified by match to protein family HMM PF05164. (100 aa)    
Predicted Functional Partners:
PFL_0491
Conserved hypothetical protein.
  
    0.808
PFL_0493
Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.
       0.776
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
   
 
 0.488
PFL_2076
CvpA family protein; Identified by similarity to SP:P08550; match to protein family HMM PF02674.
  
  
 0.471
PFL_0490
Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.
       0.444
ubiH
2-polyprenyl-6-methoxyphenol 4-hydroxylase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01984; match to protein family HMM TIGR01988.
     
 0.411
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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