STRINGSTRING
wapP wapP PFL_0517 PFL_0517 waaP waaP PFL_0516 PFL_0516 waaG waaG PFL_0518 PFL_0518 rfaC rfaC rfaF rfaF PFL_0521 PFL_0521 PFL_0522 PFL_0522 PFL_5908 PFL_5908
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
wapPPutative heptose kinase WapP; Identified by similarity to GB:AAG08393.1; match to protein family HMM PF06293. (244 aa)    
Predicted Functional Partners:
PFL_0517
Conserved hypothetical protein.
 
     0.953
waaP
Lipopolysaccharide kinase WaaP; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
 
     0.952
PFL_0516
Lipopolysaccharide kinase, WaaP family; Identified by match to protein family HMM PF06293.
 
     0.952
waaG
Lipopolysaccharide core biosynthesis protein WaaG; Identified by similarity to GB:AAD33103.1; match to protein family HMM PF00534.
 
     0.950
PFL_0518
Carbamoyltransferase; Identified by match to protein family HMM PF02543.
 
   
 0.909
rfaC
Lipopolysaccharide heptosyltransferase I; Identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193.
 
     0.868
rfaF
Lipopolysaccharide heptosyltransferase II; Identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195.
 
     0.844
PFL_0521
Identified by match to protein family HMM PF02585.
 
     0.839
PFL_0522
Conserved domain protein.
 
     0.804
PFL_5908
SdiA-regulated domain protein; Identified by match to protein family HMM PF06977.
  
     0.763
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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