STRINGSTRING
PFL_0520 PFL_0520 PFL_0521 PFL_0521 PFL_0518 PFL_0518 PFL_0519 PFL_0519 PFL_0523 PFL_0523 PFL_0522 PFL_0522 PFL_0524 PFL_0524 cat cat waaP waaP rfaC rfaC rfaF rfaF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0520Identified by match to protein family HMM PF07395. (298 aa)    
Predicted Functional Partners:
PFL_0521
Identified by match to protein family HMM PF02585.
  
  
 0.835
PFL_0518
Carbamoyltransferase; Identified by match to protein family HMM PF02543.
     
 0.823
PFL_0519
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
  
  
 0.821
PFL_0523
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
  
  
 0.687
PFL_0522
Conserved domain protein.
       0.653
PFL_0524
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
     
 0.647
cat
Putative chloramphenicol O-acetyltransferase; Identified by similarity to SP:P26841.
       0.590
waaP
Lipopolysaccharide kinase WaaP; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
  
  
 0.540
rfaC
Lipopolysaccharide heptosyltransferase I; Identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193.
  
    0.531
rfaF
Lipopolysaccharide heptosyltransferase II; Identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195.
  
    0.521
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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