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PFL_0597 PFL_0597 pcd pcd soxA soxA glnA_3 glnA_3 PFL_2952 PFL_2952 PFL_5928 PFL_5928 puuA-2 puuA-2 puuA puuA PFL_4488 PFL_4488 PFL_0595 PFL_0595 puuD puuD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
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[Homology]
Score
PFL_0597FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266. (427 aa)    
Predicted Functional Partners:
pcd
Piperideine-6-carboxylate dehydrogenase; Identified by similarity to GB:BAB19801.1; match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
 
  
 0.750
soxA
Sarcosine oxidase, alpha subunit; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372; Belongs to the GcvT family.
 
 
 0.750
glnA_3
Glutamine synthetase, catalytic domain protein; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
 
  
 0.635
PFL_2952
Glutamate--ammonia ligase; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
 
  
 0.611
PFL_5928
Glutamate--ammonia ligase; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
 
  
 0.611
puuA-2
Putative glutamate--putrescine ligase; Identified by similarity to SP:P78061; match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
 
  
 0.600
puuA
Putative gamma-glutamylputrescine synthetase PuuA; Identified by similarity to SP:P78061; match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
 
  
 0.599
PFL_4488
Glutamate--ammonia ligase; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family.
 
  
 0.514
PFL_0595
Transcriptional regulator, LysR family; Identified by similarity to GB:BAC65316.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
     0.509
puuD
Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD; Identified by similarity to SP:Q3Z146; match to protein family HMM PF00117; match to protein family HMM PF07722.
 
  
 0.444
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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