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PFL_0647 PFL_0647 oprC oprC PFL_0646 PFL_0646 PFL_0650 PFL_0650 PFL_0644 PFL_0644 PFL_0649 PFL_0649 PFL_0645 PFL_0645 PFL_0643 PFL_0643 copC copC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
PFL_0647PepSY-associated membrane protein; Identified by match to protein family HMM PF03413; match to protein family HMM PF03929. (460 aa)    
Predicted Functional Partners:
oprC
TonB-dependent outermembrane copper receptor OprC; Receptor; identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01778.
  
  
 0.738
PFL_0646
TonB-dependent outermembrane receptor; Receptor; identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783.
 
  
 0.603
PFL_0650
Conserved hypothetical protein; Identified by match to protein family HMM PF04314.
 
    0.602
PFL_0644
Iron-chelate ABC transporter, FeCT family, periplasmic iron-chelate-binding protein; Identified by match to protein family HMM PF01497.
 
     0.551
PFL_0649
Conserved hypothetical protein.
  
    0.468
PFL_0645
Iron-chelate ABC transporter, FeCT family, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.447
PFL_0643
Iron-chelate uptake ABC transporter, FeCT family, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.422
copC
Copper resistance protein CopC; Identified by match to protein family HMM PF04234.
  
    0.406
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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