STRINGSTRING
PFL_0651 PFL_0651 PFL_0650 PFL_0650 PFL_0652 PFL_0652 PFL_0653 PFL_0653 PFL_0649 PFL_0649 oprC oprC cobL cobL cobK cobK cbiD cbiD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0651Conserved hypothetical protein. (132 aa)    
Predicted Functional Partners:
PFL_0650
Conserved hypothetical protein; Identified by match to protein family HMM PF04314.
       0.668
PFL_0652
Putative addiction module antidote protein; Identified by match to protein family HMM TIGR02684.
       0.581
PFL_0653
Putative addiction module killer protein; Identified by match to protein family HMM PF05973; match to protein family HMM TIGR02683.
       0.578
PFL_0649
Conserved hypothetical protein.
       0.551
oprC
TonB-dependent outermembrane copper receptor OprC; Receptor; identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01778.
       0.429
cobL
Precorrin-6y C5,15-methyltransferase; Identified by similarity to SP:P21921; match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469.
       0.422
cobK
precorrin-6A reductase; Identified by match to protein family HMM PF02571.
       0.415
cbiD
Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
       0.415
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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