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PFL_0663 PFL_0663 PFL_0662 PFL_0662 PFL_6239 PFL_6239 retS retS fic fic PFL_6238 PFL_6238 ldhA ldhA arsH arsH chpA chpA PFL_0661 PFL_0661 PFL_6237 PFL_6237
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0663Membrane protein, MarC family; Identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427. (198 aa)    
Predicted Functional Partners:
PFL_0662
Putative lipoprotein.
       0.651
PFL_6239
Hypothetical protein.
       0.651
retS
Sensor histidine kinase/response regulator RetS; Identified by similarity to GB:AAG08241.1; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07695; match to protein family HMM PF07696.
       0.638
fic
Cell filamentation protein Fic; Identified by similarity to SP:P20605; match to protein family HMM PF02661.
   
  
 0.626
PFL_6238
Hypothetical protein.
       0.566
ldhA
D-lactate dehydrogenase; Identified by similarity to SP:P52643; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.561
arsH
Arsenical resistance protein ArsH; Identified by match to protein family HMM PF03358; match to protein family HMM TIGR02690.
      
 0.551
chpA
Putative sensor histidine kinase/response regulator ChpA; Identified by similarity to GB:AAC23931.2; match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518.
      
 0.536
PFL_0661
Conserved hypothetical protein.
       0.509
PFL_6237
Hypothetical protein.
       0.509
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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