STRINGSTRING
PFL_0681 PFL_0681 mvaV mvaV mvaT mvaT PFL_4981 PFL_4981 PFL_0540 PFL_0540 PFL_4782 PFL_4782 smtA smtA PFL_0680 PFL_0680 PFL_5774 PFL_5774 PFL_5777 PFL_5777 PFL_0685 PFL_0685
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0681Conserved hypothetical protein. (97 aa)    
Predicted Functional Partners:
mvaV
Transcriptional regulator MvaV; Identified by similarity to GB:AAX18931.1.
  
     0.726
mvaT
Transcriptional regulator MvaT; Identified by similarity to GB:AAX18928.1.
  
     0.726
PFL_4981
Putative transcriptional regulator; Identified by similarity to GB:AAC46083.1.
  
     0.726
PFL_0540
Putative lipoprotein.
  
     0.697
PFL_4782
Conserved hypothetical protein.
  
     0.644
smtA
SmtA protein; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family.
 
     0.642
PFL_0680
Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.
       0.633
PFL_5774
Integral membrane protein, YccS/YhfK family; Identified by match to protein family HMM PF05976; match to protein family HMM TIGR01666; match to protein family HMM TIGR01667.
  
     0.624
PFL_5777
Conserved hypothetical protein.
  
     0.605
PFL_0685
Putative lipoprotein.
 
     0.580
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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