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smtA smtA PFL_0682 PFL_0682 cmoA cmoA PFL_0684 PFL_0684 cmoB cmoB PFL_0685 PFL_0685 PFL_0681 PFL_0681 mnmC mnmC ycgL ycgL PFL_3285 PFL_3285 PFL_0680 PFL_0680
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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smtASmtA protein; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family. (249 aa)    
Predicted Functional Partners:
PFL_0682
Conserved hypothetical protein.
       0.791
cmoA
tRNA (cmo5U34)-methyltransferase CmoA; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).
 
 
 
 0.784
PFL_0684
Putative lipoprotein.
       0.777
cmoB
tRNA (mo5U34)-methyltransferase CmoB; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
 
   
 0.749
PFL_0685
Putative lipoprotein.
       0.656
PFL_0681
Conserved hypothetical protein.
 
     0.642
mnmC
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the N-terminal section; belongs to the methyltransferase superfamily. tRNA (mnm(5)s(2)U34)-methyltransferase family.
  
 
 
 0.584
ycgL
YcgL domain protein; Identified by similarity to SP:P0AB43; match to protein family HMM PF05166.
 
     0.556
PFL_3285
Identified by match to protein family HMM PF00149.
 
 
   0.544
PFL_0680
Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.
   
 
 0.501
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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