STRINGSTRING
PFL_0710 PFL_0710 cueR cueR PFL_0712 PFL_0712 czcD czcD PFL_1915 PFL_1915 cadA_1 cadA_1 cadA_2 cadA_2 fieF fieF PFL_2508 PFL_2508 PFL_2507 PFL_2507 copA copA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
PFL_0710Copper-exporting ATPase; Identified by similarity to SP:P73241; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525. (798 aa)    
Predicted Functional Partners:
cueR
Cu(I)-responsive transcriptional regulator; Identified by similarity to SP:P0A9G4; match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02044.
 
  
 0.881
PFL_0712
Putative copper chaperone CopZ; Identified by similarity to SP:O32221; match to protein family HMM PF00403.
 
 
 0.868
czcD
Cobalt/zinc/cadmium resistance protein CzcD; Identified by similarity to SP:P13512; match to protein family HMM PF01545; match to protein family HMM TIGR01297.
 
  
 0.778
PFL_1915
Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
 
 
0.775
cadA_1
Cadmium-exporting ATPase; Identified by similarity to GB:AAK48831.1; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.
 
 
0.759
cadA_2
Cadmium-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.
 
 
0.757
fieF
Cation diffusion facilitator family transporter FieF; Identified by similarity to SP:P69380; match to protein family HMM PF01545; match to protein family HMM TIGR01297; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
 
 0.750
PFL_2508
Cation efflux protein; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297.
  
  
 0.747
PFL_2507
Transcriptional repressor, FrmR family; Identified by similarity to SP:P0AAP3; match to protein family HMM PF02583.
  
  
 0.737
copA
Copper resistance protein A; Identified by similarity to SP:P12374; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480.
 
 
 0.731
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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