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PFL_0721 PFL_0721 PFL_0728 PFL_0728 PFL_0726 PFL_0726 PFL_0727 PFL_0727 PFL_0720 PFL_0720 guaA guaA add add PFL_0722 PFL_0722 rbsA rbsA PFL_2594 PFL_2594 PFL_4370 PFL_4370
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0721Lipoprotein, Bmp family; Identified by match to protein family HMM PF02608. (360 aa)    
Predicted Functional Partners:
PFL_0728
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.990
PFL_0726
ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.982
PFL_0727
ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.977
PFL_0720
Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171; Belongs to the iron/ascorbate-dependent oxidoreductase family.
       0.616
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.474
add
Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism.
       0.441
PFL_0722
Identified by match to protein family HMM PF01699.
       0.436
rbsA
Ribose ABC transporter, ATP-binding protein; Based on sequence similarity with rbsA from E. coli (SP:P04983); identified by match to protein family HMM PF00005.
 
     0.431
PFL_2594
Ribose ABC transporter, ATP-binding protein; Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Carbohydrate importer 2 (CUT2) (TC 3.A.1.2) family.
 
     0.425
PFL_4370
Membrane protein, DUF989 family; Identified by match to protein family HMM PF06181.
 
     0.414
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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