STRINGSTRING
PFL_0724 PFL_0724 xdhC xdhC xdhB xdhB uraH_2 uraH_2 uraH_1 uraH_1 ygfO ygfO yicE yicE PFL_0725 PFL_0725 xdhA xdhA PFL_2039 PFL_2039 PFL_0723 PFL_0723
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurrence
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[Homology]
Score
PFL_0724Identified by match to protein family HMM PF01979; match to protein family HMM PF07969. (452 aa)    
Predicted Functional Partners:
xdhC
Xanthine dehydrogenase accessory protein XdhC; Identified by similarity to GB:CAB41849.1; match to protein family HMM PF02625; match to protein family HMM TIGR02964.
 
  
 0.648
xdhB
Xanthine dehydrogenase, molybdopterin binding subunit; Identified by similarity to GB:CAA04470.2; match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR02965.
 
  
 0.592
uraH_2
Hydroxyisourate hydrolase; Identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
   
 0.569
uraH_1
Hydroxyisourate hydrolase; Identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
   
 0.569
ygfO
High-affinity xanthine transporter, NCS2 family, YgfO; Identified by similarity to SP:P67444; match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173.
 
    0.507
yicE
High-affinity xanthine transporter, NCS2 family, YicE; See PMID: 16096267 for more information; identified by similarity to SP:P0AGM9; match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173.
 
    0.494
PFL_0725
Short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.
       0.491
xdhA
Xanthine dehydrogenase, small subunit; Identified by similarity to GB:CAA04469.1; match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450; match to protein family HMM TIGR02963.
 
     0.472
PFL_2039
Identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173.
 
    0.461
PFL_0723
Conserved hypothetical protein; Identified by similarity to GB:AAO07135.1; match to protein family HMM PF03781.
       0.445
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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