Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PFL_0724 | PFL_0725 | PFL_0724 | PFL_0725 | Identified by match to protein family HMM PF01979; match to protein family HMM PF07969. | Short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106. | 0.491 |
PFL_0725 | PFL_0724 | PFL_0725 | PFL_0724 | Short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106. | Identified by match to protein family HMM PF01979; match to protein family HMM PF07969. | 0.491 |
PFL_0725 | PFL_4656 | PFL_0725 | PFL_4656 | Short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106. | AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00668. | 0.603 |
PFL_0725 | rzxA | PFL_0725 | PFL_2997 | Short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106. | Polyketide synthase/nonribosomal peptide synthetase hybrid RzxA; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM PF08415. | 0.576 |
PFL_4656 | PFL_0725 | PFL_4656 | PFL_0725 | AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00668. | Short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106. | 0.603 |
PFL_4656 | rzxA | PFL_4656 | PFL_2997 | AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00668. | Polyketide synthase/nonribosomal peptide synthetase hybrid RzxA; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM PF08415. | 0.999 |
rzxA | PFL_0725 | PFL_2997 | PFL_0725 | Polyketide synthase/nonribosomal peptide synthetase hybrid RzxA; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM PF08415. | Short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106. | 0.576 |
rzxA | PFL_4656 | PFL_2997 | PFL_4656 | Polyketide synthase/nonribosomal peptide synthetase hybrid RzxA; Previously identified and characterized. See Loper et al 2008 (PMID: 18344330) and Brendel et al 2007 (PMID: 17609750) for more information; identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM PF08415. | AMP-binding enzyme; Identified by match to protein family HMM PF00501; match to protein family HMM PF00668. | 0.999 |