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PFL_0726 PFL_0726 PFL_0728 PFL_0728 PFL_0727 PFL_0727 PFL_0721 PFL_0721 PFL_2594 PFL_2594 rbsA rbsA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
PFL_0726ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. (308 aa)    
Predicted Functional Partners:
PFL_0728
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.998
PFL_0727
ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
0.997
PFL_0721
Lipoprotein, Bmp family; Identified by match to protein family HMM PF02608.
 
 
 0.982
PFL_2594
Ribose ABC transporter, ATP-binding protein; Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Carbohydrate importer 2 (CUT2) (TC 3.A.1.2) family.
     0.617
rbsA
Ribose ABC transporter, ATP-binding protein; Based on sequence similarity with rbsA from E. coli (SP:P04983); identified by match to protein family HMM PF00005.
     0.614
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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