STRINGSTRING
ampE ampE ampD ampD PFL_4439 PFL_4439 algK algK PFL_5135 PFL_5135 PFL_6265 PFL_6265 algG algG PFL_0852 PFL_0852 PFL_0107 PFL_0107 algZ algZ algL algL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampEInner membrane protein AmpE; Identified by similarity to SP:P13017. (278 aa)    
Predicted Functional Partners:
ampD
N-acetyl-anhydromuramyl-L-alanine amidase AmpD; Identified by similarity to GB:AAC98783.1; match to protein family HMM PF01510.
  
  
 0.837
PFL_4439
Conserved hypothetical protein.
  
     0.762
algK
Alginate biosynthesis protein AlgK; Identified by similarity to GB:AAC38141.1; match to protein family HMM PF08238.
  
     0.742
PFL_5135
Conserved hypothetical protein.
  
     0.734
PFL_6265
Conserved hypothetical protein; Identified by match to protein family HMM TIGR02449.
  
     0.731
algG
poly(beta-D-mannuronate) C5 epimerase AlgG; Identified by similarity to SP:Q51371.
  
     0.721
PFL_0852
Conserved hypothetical protein; Identified by match to protein family HMM PF07793.
 
     0.713
PFL_0107
Conserved hypothetical protein.
  
     0.708
algZ
Alginate biosynthesis transcriptional activator AlgZ; Identified by similarity to GB:AAD55364.1; match to protein family HMM PF03869.
  
     0.691
algL
Alginate lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism. May serve to degrade mislocalized alginate that is trapped in the periplasmic space.
  
     0.679
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.