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dppB dppB dppF dppF dppD dppD dppC dppC dppA1 dppA1 dppA2 dppA2 dppA3 dppA3 PFL_6050 PFL_6050 PFL_4026 PFL_4026 PFL_4027 PFL_4027 PFL_3162 PFL_3162
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppBDipeptide ABC transporter, permease protein DppB; Identified by similarity to SP:P0AEF8; match to protein family HMM PF00528. (336 aa)    
Predicted Functional Partners:
dppF
Dipeptide ABC transporter, ATP-binding protein DppF; Identified by similarity to SP:P37313; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 0.994
dppD
Dipeptide ABC transporter, ATP-binding protein DppD; Identified by similarity to SP:P0AAG0; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 0.994
dppC
Dipeptide ABC transporter, permease protein DppC; Identified by similarity to SP:P0AEG1; match to protein family HMM PF00528.
 
 0.994
dppA1
Dipeptide ABC transporter, periplasmic dipeptide-binding protein DppA 1; Identified by similarity to SP:P23847; match to protein family HMM PF00496.
 0.987
dppA2
Dipeptide ABC transporter, periplasmic dipeptide-binding protein DppA 2; Identified by similarity to SP:P23847; match to protein family HMM PF00496.
 0.978
dppA3
Dipeptide ABC transporter, periplasmic dipeptide-binding protein DppA 3; Identified by similarity to SP:P23847; match to protein family HMM PF00496.
 0.976
PFL_6050
Extracellular solute-binding protein, family 5; Identified by match to protein family HMM PF00496.
 0.971
PFL_4026
Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P77463; match to protein family HMM PF00528.
  
 0.894
PFL_4027
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P77268; match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.892
PFL_3162
ABC transporter, peptide/opine/nickel uptake transporter (PepT) family, permease protein; Identified by match to protein family HMM PF00528.
  
 0.887
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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