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slyD slyD ureG ureG rpsB rpsB rpsC rpsC PFL_0939 PFL_0939 PFL_0941 PFL_0941 rpsL rpsL rpsJ rpsJ pta pta PFL_0937 PFL_0937 hemF hemF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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slyDPeptidyl-prolyl cis-trans isomerase, FKBP-type SlyD; Identified by similarity to SP:P0A9K9; match to protein family HMM PF00254. (161 aa)    
Predicted Functional Partners:
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
    
 
 0.743
rpsB
Ribosomal protein S2; Identified by similarity to SP:P02351; match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family.
  
   0.736
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.675
PFL_0939
Conserved hypothetical protein.
  
    0.633
PFL_0941
Glutathione peroxidase, BtuE family; See Arenas et. al. 2010 (PMID: 20621065) for characterization of the glutathione peroxidase activity of btuE in E. coli; identified by similarity to SP:P06610; match to protein family HMM PF00255.
       0.563
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
  
 0.537
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
    0.534
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
    0.528
PFL_0937
Acyltransferase; Identified by match to protein family HMM PF01553.
       0.497
hemF
Coproporphyrinogen III oxidase, aerobic; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
  
   
 0.492
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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