STRINGSTRING
trxB_1 trxB_1 trxA trxA kdgK_2 kdgK_2 rpe rpe PFL_4857 PFL_4857 ahpC ahpC metG metG lolD lolD lsfA lsfA PFL_5526 PFL_5526 PFL_0266 PFL_0266
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxB_1Thioredoxin-disulfide reductase; Identified by similarity to SP:P09625; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292. (320 aa)    
Predicted Functional Partners:
trxA
Thioredoxin; Identified by similarity to SP:P00274; match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.
 
 0.906
kdgK_2
2-dehydro-3-deoxygluconokinase; Identified by similarity to SP:P45416; match to protein family HMM PF00294.
    
 0.901
rpe
Ribulose-phosphate 3-epimerase; Identified by similarity to SP:P32661; match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.
  
 
 0.838
PFL_4857
Antioxidant, AhpC/TSA family; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.
  
 
 0.722
ahpC
Alkyl hydroperoxide reductase, C subunit; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.715
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 
 0.630
lolD
Lipoprotein-releasing system, ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
  
 0.604
lsfA
Thiol-specific antioxidant protein LsfA; Identified by similarity to GB:ABJ12706.1; match to protein family HMM PF00578; match to protein family HMM PF08534.
  
 
 0.599
PFL_5526
Thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068.
  
 
 0.541
PFL_0266
Rubredoxin; Identified by similarity to GB:BAB33291.1; match to protein family HMM PF00301.
  
  
 0.531
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.