STRINGSTRING
PFL_0976 PFL_0976 PFL_0975 PFL_0975 PFL_3405 PFL_3405 PFL_5238 PFL_5238 PFL_5437 PFL_5437 PFL_5918 PFL_5918 PFL_2737 PFL_2737 PFL_0549 PFL_0549 PFL_6006 PFL_6006
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0976Identified by match to protein family HMM PF06146; Belongs to the PsiE family. (166 aa)    
Predicted Functional Partners:
PFL_0975
YebG family protein; Identified by similarity to SP:P0ACY9; match to protein family HMM PF07130.
 
   
 0.598
PFL_3405
Conserved hypothetical protein; Identified by match to protein family HMM PF08980.
  
     0.478
PFL_5238
Conserved hypothetical protein.
  
     0.443
PFL_5437
Conserved hypothetical protein; Identified by match to protein family HMM PF02698.
  
     0.441
PFL_5918
Conserved hypothetical protein.
  
     0.423
PFL_2737
Conserved hypothetical protein.
  
     0.416
PFL_0549
Lipoprotein of unknown function, DUF330 family; Identified by match to protein family HMM PF03886.
  
     0.405
PFL_6006
Conserved hypothetical protein.
  
     0.405
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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