STRINGSTRING
PFL_0995 PFL_0995 PFL_0996 PFL_0996 PFL_0255 PFL_0255 PFL_0989 PFL_0989 pchE pchE tonB4 tonB4 tonB2 tonB2 tonB5 tonB5 PFL_0988 PFL_0988 sftP sftP PFL_2745 PFL_2745
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
PFL_0995TonB-dependent outermembrane receptor; Transducer; identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783. (811 aa)    
Predicted Functional Partners:
PFL_0996
Conserved hypothetical protein.
  
    0.802
PFL_0255
TonB-dependent outermembrane receptor; Receptor; identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
  
 0.615
PFL_0989
Sigma factor regulatory protein, FecR/PupR family; Identified by similarity to PIR:S46356; match to protein family HMM PF04773.
 
   0.548
pchE
Enantio-pyochelin synthetase E; Previously identified and characterized. See Youard et al 2007 (PMID: 17938167) for more information; identified by similarity to GB:ABW70809.1; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08415; match to protein family HMM TIGR01733.
   
  
 0.547
tonB4
Periplasmic energy transduction protein TonB4; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.540
tonB2
TonB2 protein; See Shirley and Lamont (PMID: 19592589) for more information; identified by similarity to SP:Q9RMT3; match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
 0.531
tonB5
Periplasmic energy transduction protein TonB5; Identified by match to protein family HMM TIGR01352.
 
 
 0.524
PFL_0988
RNA polymerase sigma-70 factor, ECF family; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.523
sftP
TonB-dependent outermembrane receptor SftP; Receptor Kahnert et al. 2002; identified by similarity to GB:AAF02095.1; match to protein family HMM PF00593; match to protein family HMM PF07715.
  
  
 0.522
PFL_2745
Secretin and TonB N terminus short domain protein; Identified by match to protein family HMM PF07660.
 
 
 0.516
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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