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PFL_1002 PFL_1002 PFL_1511 PFL_1511 pqqH pqqH fusA fusA PFL_2177 PFL_2177 PFL_1005 PFL_1005 PFL_4591 PFL_4591 cynR cynR PFL_0381 PFL_0381 sftR sftR PFL_0802 PFL_0802
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_1002Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (322 aa)    
Predicted Functional Partners:
PFL_1511
Transcriptional regulator, LysR family; Identified by similarity to SP:P94501; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.651
pqqH
Transcriptional regulator PqqH; Identified by similarity to GB:AAX10031.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.644
fusA
Fusaric acid resistance protein FusA; Identified by similarity to SP:P24126; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
  
 0.633
PFL_2177
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.627
PFL_1005
Conserved hypothetical protein; Identified by match to protein family HMM PF07869.
 
     0.622
PFL_4591
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.610
cynR
HTH-type transcriptional regulator CynR; Identified by similarity to SP:P27111; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.609
PFL_0381
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.606
sftR
Transcriptional regulator SftR; Identified by similarity to GB:AAD31783.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.604
PFL_0802
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.584
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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