STRINGSTRING
PFL_1139 PFL_1139 PFL_5272 PFL_5272 PFL_1645 PFL_1645 PFL_6017 PFL_6017 minE minE PFL_1119 PFL_1119 algZ algZ PFL_5135 PFL_5135 PFL_4417 PFL_4417 PFL_1947 PFL_1947 algG algG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1139Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (238 aa)    
Predicted Functional Partners:
PFL_5272
Conserved hypothetical protein.
  
     0.753
PFL_1645
HPt domain protein; Identified by match to protein family HMM PF01627.
  
     0.688
PFL_6017
Conserved hypothetical protein.
  
     0.682
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.678
PFL_1119
Identified by match to protein family HMM PF07152.
   
    0.675
algZ
Alginate biosynthesis transcriptional activator AlgZ; Identified by similarity to GB:AAD55364.1; match to protein family HMM PF03869.
  
     0.645
PFL_5135
Conserved hypothetical protein.
  
     0.642
PFL_4417
Conserved hypothetical protein.
 
     0.638
PFL_1947
Conserved hypothetical protein.
  
     0.624
algG
poly(beta-D-mannuronate) C5 epimerase AlgG; Identified by similarity to SP:Q51371.
  
     0.614
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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