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dapE dapE dapC dapC dapF_1 dapF_1 dapF_2 dapF_2 argD argD pqqI pqqI PFL_4034 PFL_4034 rrmA rrmA PFL_1163 PFL_1163 prmB prmB argD-2 argD-2
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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dapESuccinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. (383 aa)    
Predicted Functional Partners:
dapC
Succinyldiaminopimelate transaminase; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR03538.
 
  
 0.945
dapF_1
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.923
dapF_2
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.923
argD
Acetylornithine transaminase; Identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.915
pqqI
Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.915
PFL_4034
Putative diaminopimelate epimerase; Identified by match to protein family HMM PF01678.
    
 0.906
rrmA
Ribosomal RNA large subunit methyltransferase A; Identified by similarity to SP:P36999; match to protein family HMM PF08241; match to protein family HMM PF08242.
  
    0.892
PFL_1163
Conserved hypothetical protein.
       0.605
prmB
protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
 
  
 0.604
argD-2
Acetylornithine/succinyldiaminopimelate aminotransferase; Identified by similarity to SP:Q885K0; match to protein family HMM PF00202; match to protein family HMM TIGR00707; match to protein family HMM TIGR03246; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.575
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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