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PFL_1166 PFL_1166 PFL_0316 PFL_0316 PFL_1106 PFL_1106 PFL_1167 PFL_1167 dapE dapE rrmA rrmA fitF fitF PFL_4322 PFL_4322 morA morA PFL_1425 PFL_1425 PFL_1163 PFL_1163
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1166Identified by match to protein family HMM PF00332; match to protein family HMM PF00535. (863 aa)    
Predicted Functional Partners:
PFL_0316
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
 
 0.697
PFL_1106
Response regulator/EAL domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563.
  
 
 0.649
PFL_1167
Identified by match to protein family HMM PF00899.
       0.591
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
     
 0.531
rrmA
Ribosomal RNA large subunit methyltransferase A; Identified by similarity to SP:P36999; match to protein family HMM PF08241; match to protein family HMM PF08242.
       0.522
fitF
Sensory box sensor histidine kinase/response regulator FitF; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91232.1; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229.
 
 
 0.512
PFL_4322
Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
  
  
 0.500
morA
Developmental regulator MorA; Identified by similarity to GB:AAP85527.1; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
  
  
 0.500
PFL_1425
GAF domain/cyclic diguanylate phosphodiesterase (EAL) domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF01590.
  
  
 0.485
PFL_1163
Conserved hypothetical protein.
       0.481
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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