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PFL_1240 PFL_1240 PFL_1884 PFL_1884 PFL_3599 PFL_3599 PFL_2177 PFL_2177 PFL_3531 PFL_3531 PFL_3594 PFL_3594 fpr_1 fpr_1 PFL_0032 PFL_0032 PFL_4560 PFL_4560 PFL_0980 PFL_0980 catR catR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1240Transcriptional regulator, LysR family; Identified by similarity to SP:P0ACR4; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (308 aa)    
Predicted Functional Partners:
PFL_1884
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.691
PFL_3599
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.682
PFL_2177
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.669
PFL_3531
Transcriptional regulator, LysR family; Identified by similarity to SP:P52686; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.665
PFL_3594
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.648
fpr_1
ferredoxin--NADP(+) reductase; Identified by similarity to SP:Q44532; match to protein family HMM PF00175; match to protein family HMM PF00970.
 
   
 0.645
PFL_0032
Putative choline sulfate-utilization transcription factor; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR03418; Belongs to the LysR transcriptional regulatory family.
  
     0.615
PFL_4560
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.610
PFL_0980
Transcriptional regulator, LysR family; Identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.570
catR
Transcriptional activator CatR; Identified by similarity to SP:P20667; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.535
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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