PFL_1251 protein (Pseudomonas protegens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PFL_1251

Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331. (882 aa)

Predicted Functional Partners:

PFL_1250

0.962

PFL_0086

0.615

PFL_4417

0.589

PFL_5458

0.577

PFL_2568

0.570

PFL_0626

0.559

clsA

0.556

ribF

0.555

PFL_2876

0.550

PFL_4744

0.550

Your Current Organism:

Pseudomonas protegens

NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFL_0086	PFL_1251	PFL_0086	PFL_1251	Identified by match to protein family HMM PF03372.	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	0.615
PFL_0086	PFL_5458	PFL_0086	PFL_5458	Identified by match to protein family HMM PF03372.	Identified by match to protein family HMM PF01569; match to protein family HMM PF09335.	0.422
PFL_0626	PFL_1251	PFL_0626	PFL_1251	Putative membrane protein.	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	0.559
PFL_1250	PFL_1251	PFL_1250	PFL_1251	Virulence protein, VirJ family; Identified by match to protein family HMM PF06057.	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	0.962
PFL_1251	PFL_0086	PFL_1251	PFL_0086	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	Identified by match to protein family HMM PF03372.	0.615
PFL_1251	PFL_0626	PFL_1251	PFL_0626	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	Putative membrane protein.	0.559
PFL_1251	PFL_1250	PFL_1251	PFL_1250	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	Virulence protein, VirJ family; Identified by match to protein family HMM PF06057.	0.962
PFL_1251	PFL_2568	PFL_1251	PFL_2568	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	Sensory box transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF00989; match to protein family HMM TIGR00229.	0.570
PFL_1251	PFL_2876	PFL_1251	PFL_2876	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	Identified by match to protein family HMM PF03372.	0.550
PFL_1251	PFL_4417	PFL_1251	PFL_4417	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	Conserved hypothetical protein.	0.589
PFL_1251	PFL_4744	PFL_1251	PFL_4744	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	Identified by match to protein family HMM PF03372.	0.550
PFL_1251	PFL_5458	PFL_1251	PFL_5458	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	Identified by match to protein family HMM PF01569; match to protein family HMM PF09335.	0.577
PFL_1251	clsA	PFL_1251	PFL_6186	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	Phospholipase D domain protein; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.	0.556
PFL_1251	ribF	PFL_1251	PFL_5322	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.	0.555
PFL_2568	PFL_1251	PFL_2568	PFL_1251	Sensory box transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF00989; match to protein family HMM TIGR00229.	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	0.570
PFL_2876	PFL_1251	PFL_2876	PFL_1251	Identified by match to protein family HMM PF03372.	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	0.550
PFL_4417	PFL_1251	PFL_4417	PFL_1251	Conserved hypothetical protein.	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	0.589
PFL_4744	PFL_1251	PFL_4744	PFL_1251	Identified by match to protein family HMM PF03372.	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	0.550
PFL_5458	PFL_0086	PFL_5458	PFL_0086	Identified by match to protein family HMM PF01569; match to protein family HMM PF09335.	Identified by match to protein family HMM PF03372.	0.422
PFL_5458	PFL_1251	PFL_5458	PFL_1251	Identified by match to protein family HMM PF01569; match to protein family HMM PF09335.	Putative membrane protein; Identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331.	0.577

page 1 of 2

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About