Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PFL_0282 | PFL_1259 | PFL_0282 | PFL_1259 | Putative membrane protein. | Conserved hypothetical protein. | 0.662 |
PFL_0282 | PFL_5239 | PFL_0282 | PFL_5239 | Putative membrane protein. | Conserved hypothetical protein. | 0.651 |
PFL_0282 | PFL_5240 | PFL_0282 | PFL_5240 | Putative membrane protein. | Conserved hypothetical protein. | 0.555 |
PFL_0282 | sulA | PFL_0282 | PFL_1948 | Putative membrane protein. | Cell division inhibitor SulA; Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1:1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division. | 0.607 |
PFL_0282 | tolA | PFL_0282 | PFL_4759 | Putative membrane protein. | TolA protein; Identified by match to protein family HMM PF06519; match to protein family HMM TIGR01352; match to protein family HMM TIGR02794. | 0.524 |
PFL_0521 | PFL_1145 | PFL_0521 | PFL_1145 | Identified by match to protein family HMM PF02585. | Conserved hypothetical protein. | 0.590 |
PFL_0521 | PFL_1259 | PFL_0521 | PFL_1259 | Identified by match to protein family HMM PF02585. | Conserved hypothetical protein. | 0.660 |
PFL_0521 | PFL_1341 | PFL_0521 | PFL_1341 | Identified by match to protein family HMM PF02585. | Conserved hypothetical protein. | 0.664 |
PFL_0521 | oprO | PFL_0521 | PFL_1535 | Identified by match to protein family HMM PF02585. | Outer membrane porin OprO; Identified by similarity to SP:P32977; match to protein family HMM PF07396. | 0.685 |
PFL_0521 | sulA | PFL_0521 | PFL_1948 | Identified by match to protein family HMM PF02585. | Cell division inhibitor SulA; Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1:1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division. | 0.468 |
PFL_1145 | PFL_0521 | PFL_1145 | PFL_0521 | Conserved hypothetical protein. | Identified by match to protein family HMM PF02585. | 0.590 |
PFL_1145 | PFL_1259 | PFL_1145 | PFL_1259 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.642 |
PFL_1145 | PFL_1341 | PFL_1145 | PFL_1341 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.401 |
PFL_1145 | PFL_5239 | PFL_1145 | PFL_5239 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.508 |
PFL_1145 | PFL_5240 | PFL_1145 | PFL_5240 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.510 |
PFL_1145 | oprO | PFL_1145 | PFL_1535 | Conserved hypothetical protein. | Outer membrane porin OprO; Identified by similarity to SP:P32977; match to protein family HMM PF07396. | 0.567 |
PFL_1145 | tolA | PFL_1145 | PFL_4759 | Conserved hypothetical protein. | TolA protein; Identified by match to protein family HMM PF06519; match to protein family HMM TIGR01352; match to protein family HMM TIGR02794. | 0.610 |
PFL_1259 | PFL_0282 | PFL_1259 | PFL_0282 | Conserved hypothetical protein. | Putative membrane protein. | 0.662 |
PFL_1259 | PFL_0521 | PFL_1259 | PFL_0521 | Conserved hypothetical protein. | Identified by match to protein family HMM PF02585. | 0.660 |
PFL_1259 | PFL_1145 | PFL_1259 | PFL_1145 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.642 |
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