STRINGSTRING
PFL_1264 PFL_1264 hisM hisM hisP hisP hisQ hisQ hisJ hisJ astD astD astE astE PFL_1080 PFL_1080
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1264Identified by match to protein family HMM PF04952. (372 aa)    
Predicted Functional Partners:
hisM
Histidine ABC transporter, permease protein HisM; Identified by similarity to SP:P0AEU3; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
    0.791
hisP
Histidine ABC transporter, ATP-binding protein HisP; Identified by similarity to SP:P07109; match to protein family HMM PF00005.
 
    0.789
hisQ
Histidine ABC transporter, permease protein HisQ; Identified by similarity to SP:P52094; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
  
    0.740
hisJ
Histidine ABC transporter, periplasmic histidine-binding protein HisJ; Identified by similarity to SP:P0AEU0; match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.
 
    0.639
astD
Succinylglutamate-semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
     
 0.502
astE
Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily.
  
    0.487
PFL_1080
SIS domain protein; Identified by match to protein family HMM PF01380.
  
     0.414
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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