STRINGSTRING
PFL_1274 PFL_1274 PFL_1272 PFL_1272 PFL_1273 PFL_1273 algZ algZ algX algX algG algG algK algK pasA pasA algL algL PFL_4834 PFL_4834 PFL_0107 PFL_0107
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1274Conserved hypothetical protein. (165 aa)    
Predicted Functional Partners:
PFL_1272
Conserved hypothetical protein.
 
     0.821
PFL_1273
SEC-C domain protein; Identified by match to protein family HMM PF02810; Belongs to the UPF0225 family.
  
    0.810
algZ
Alginate biosynthesis transcriptional activator AlgZ; Identified by similarity to GB:AAD55364.1; match to protein family HMM PF03869.
  
     0.765
algX
Alginate biosynthesis protein AlgX; Identified by similarity to GB:AAA91126.1.
  
     0.762
algG
poly(beta-D-mannuronate) C5 epimerase AlgG; Identified by similarity to SP:Q51371.
  
     0.762
algK
Alginate biosynthesis protein AlgK; Identified by similarity to GB:AAC38141.1; match to protein family HMM PF08238.
  
     0.760
pasA
PasA protein; Identified by similarity to GB:AAZ03608.1.
  
     0.752
algL
Alginate lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism. May serve to degrade mislocalized alginate that is trapped in the periplasmic space.
  
     0.741
PFL_4834
Methyltransferase domain protein; Identified by match to protein family HMM PF08241.
  
     0.726
PFL_0107
Conserved hypothetical protein.
  
     0.725
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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