node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PFL_5412 | dinG | PFL_5412 | PFL_1279 | Identified by match to protein family HMM PF00929. | ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | 0.764 |
PFL_5412 | dnaN | PFL_5412 | PFL_0002 | Identified by match to protein family HMM PF00929. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.974 |
PFL_5412 | holB | PFL_5412 | PFL_1802 | Identified by match to protein family HMM PF00929. | DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678. | 0.920 |
PFL_5412 | polA | PFL_5412 | PFL_0082 | Identified by match to protein family HMM PF00929. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.594 |
PFL_6280 | dinG | PFL_6280 | PFL_1279 | HNH endonuclease domain protein. | ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | 0.899 |
PFL_6280 | dnaN | PFL_6280 | PFL_0002 | HNH endonuclease domain protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.552 |
PFL_6280 | polA | PFL_6280 | PFL_0082 | HNH endonuclease domain protein. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.955 |
PFL_6280 | polB | PFL_6280 | PFL_2480 | HNH endonuclease domain protein. | DNA polymerase II; Identified by similarity to SP:P21189; match to protein family HMM PF00136; match to protein family HMM PF03104. | 0.488 |
PFL_6280 | rpoA | PFL_6280 | PFL_5558 | HNH endonuclease domain protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.950 |
PFL_6280 | rpoB | PFL_6280 | PFL_5589 | HNH endonuclease domain protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.952 |
PFL_6280 | rpoZ | PFL_6280 | PFL_6062 | HNH endonuclease domain protein. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.948 |
PFL_6280 | sbcD | PFL_6280 | PFL_2730 | HNH endonuclease domain protein. | Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.628 |
dinG | PFL_5412 | PFL_1279 | PFL_5412 | ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | Identified by match to protein family HMM PF00929. | 0.764 |
dinG | PFL_6280 | PFL_1279 | PFL_6280 | ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | HNH endonuclease domain protein. | 0.899 |
dinG | dnaN | PFL_1279 | PFL_0002 | ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.708 |
dinG | holB | PFL_1279 | PFL_1802 | ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | DNA polymerase III, delta' subunit; Identified by match to protein family HMM TIGR00678. | 0.709 |
dinG | polA | PFL_1279 | PFL_0082 | ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.871 |
dinG | polB | PFL_1279 | PFL_2480 | ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | DNA polymerase II; Identified by similarity to SP:P21189; match to protein family HMM PF00136; match to protein family HMM PF03104. | 0.682 |
dinG | rpoA | PFL_1279 | PFL_5558 | ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.860 |
dinG | rpoB | PFL_1279 | PFL_5589 | ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.859 |