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braC braC braD braD braE braE braF braF braG braG livJ livJ PFL_2622 PFL_2622 PFL_3515 PFL_3515 PFL_3674 PFL_3674 livM livM livH livH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
braCBranched-chain amino acid transport system substrate-binding protein; Identified by similarity to SP:P21175; match to protein family HMM PF01094. (375 aa)    
Predicted Functional Partners:
braD
Branched-chain amino acid ABC transporter, permease protein BraD; Identified by similarity to SP:P21627; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.996
braE
Branched-chain amino acid ABC transporter, permease protein BraE; Identified by similarity to SP:P21628; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.993
braF
Branched-chain amino acid ABC transporter, ATP-binding protein BraF; Identified by similarity to SP:P21629; match to protein family HMM PF00005.
 
  
 0.922
braG
Branched-chain amino acid ABC transporter, ATP-binding protein BraG; Identified by similarity to SP:P21630; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
  
 0.913
livJ
Branched-chain amino acid transport system substrate-binding protein; Identified by similarity to SP:P0AD96; match to protein family HMM PF01094.
  
  
 
0.908
PFL_2622
Putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein.
     
  0.900
PFL_3515
Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein; Identified by similarity to SP:P21175; match to protein family HMM PF01094.
  
  
 
0.900
PFL_3674
Putative branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM TIGR01409.
     
 
0.900
livM
High-affinity branched-chain amino acid ABC transporter, permease protein LivM; Identified by similarity to SP:P22729; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.894
livH
High-affinity branched-chain amino acid ABC transporter, permease protein LivH; Identified by similarity to SP:P0AEX7; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.871
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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