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PFL_1322 PFL_1322 pcaC pcaC pcaD pcaD pcaB pcaB catI catI catJ catJ rpmE_1 rpmE_1 PFL_0266 PFL_0266 rpmJ rpmJ pcaF pcaF pcaH_1 pcaH_1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1322MFS transporter, metabolite:H+ symporter (MHS) family protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883. (431 aa)    
Predicted Functional Partners:
pcaC
4-carboxymuconolactone decarboxylase; Identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425.
  
  
 0.678
pcaD
3-oxoadipate enol-lactonase; Identified by similarity to GB:AAL02408.1; match to protein family HMM PF00561; match to protein family HMM TIGR02427.
  
    0.670
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Identified by similarity to SP:O31385; match to protein family HMM PF00206; match to protein family HMM TIGR02426.
  
  
 0.656
catI
3-oxoadipate:succinyl-CoA transferase, A subunit; Identified by similarity to GB:AAL02405.1; match to protein family HMM PF01144.
  
  
 0.594
catJ
3-oxoadipate:succinyl-CoA transferase, B subunit; Identified by similarity to GB:AAL02406.1; match to protein family HMM PF01144.
  
    0.557
rpmE_1
Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105.
   
    0.474
PFL_0266
Rubredoxin; Identified by similarity to GB:BAB33291.1; match to protein family HMM PF00301.
   
  
 0.467
rpmJ
Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.
   
    0.454
pcaF
Beta-ketoadipyl CoA thiolase; Identified by similarity to SP:Q51956; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; match to protein family HMM TIGR02430; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.438
pcaH_1
Protocatechuate 3,4-dioxygenase, beta subunit; Identified by similarity to SP:P15110; match to protein family HMM PF00775; match to protein family HMM TIGR02422.
  
    0.430
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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