STRINGSTRING
pcaB pcaB pcaC pcaC purL purL pcaH_1 pcaH_1 pcaG_1 pcaG_1 pcaH_2 pcaH_2 pcaG_2 pcaG_2 PFL_0890 PFL_0890 pcaD pcaD purC purC purA purA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaB3-carboxy-cis,cis-muconate cycloisomerase; Identified by similarity to SP:O31385; match to protein family HMM PF00206; match to protein family HMM TIGR02426. (454 aa)    
Predicted Functional Partners:
pcaC
4-carboxymuconolactone decarboxylase; Identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425.
 
 
 0.994
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
  
 0.991
pcaH_1
Protocatechuate 3,4-dioxygenase, beta subunit; Identified by similarity to SP:P15110; match to protein family HMM PF00775; match to protein family HMM TIGR02422.
 
 
 0.985
pcaG_1
Protocatechuate 3,4-dioxygenase, alpha subunit; Identified by similarity to SP:P20371; match to protein family HMM PF00775; match to protein family HMM TIGR02423.
 
 
 0.984
pcaH_2
Protocatechuate 3,4-dioxygenase, beta subunit; Identified by similarity to SP:P00437; match to protein family HMM PF00775; match to protein family HMM TIGR02422.
 
 
 0.976
pcaG_2
Protocatechuate 3,4-dioxygenase, alpha subunit; Identified by similarity to SP:P00436; match to protein family HMM PF00775; match to protein family HMM TIGR02423.
 
 
 0.975
PFL_0890
Putative 4-carboxymuconolactone decarboxylase; Identified by similarity to SP:P20370; match to protein family HMM PF02627.
 
 
 0.971
pcaD
3-oxoadipate enol-lactonase; Identified by similarity to GB:AAL02408.1; match to protein family HMM PF00561; match to protein family HMM TIGR02427.
 
  
 0.925
purC
Phosphoribosylaminoimidazolesuccinocarboxamide synthase; Identified by similarity to SP:P21155; match to protein family HMM PF01259; match to protein family HMM TIGR00081; Belongs to the SAICAR synthetase family.
 
 
 0.912
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
 
 
 0.867
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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