STRINGSTRING
PFL_1344 PFL_1344 PFL_1345 PFL_1345 PFL_1346 PFL_1346 PFL_1343 PFL_1343 PFL_1342 PFL_1342 dapD dapD PFL_1347 PFL_1347
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1344Amidohydrolase; Identified by similarity to SP:P45493; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891. (391 aa)    
Predicted Functional Partners:
PFL_1345
Transporter, major facilitator family; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.
       0.538
PFL_1346
Identified by match to protein family HMM PF01425.
       0.531
PFL_1343
Conserved hypothetical protein.
       0.470
PFL_1342
Beta-lactamase; Identified by match to protein family HMM PF00144.
       0.460
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
  
  
 0.444
PFL_1347
Transcriptional regulator, IclR family; Identified by similarity to SP:P77569; match to protein family HMM PF09339.
       0.403
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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