STRINGSTRING
PFL_1345 PFL_1345 PFL_1346 PFL_1346 PFL_1347 PFL_1347 PFL_1344 PFL_1344
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1345Transporter, major facilitator family; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. (436 aa)    
Predicted Functional Partners:
PFL_1346
Identified by match to protein family HMM PF01425.
       0.781
PFL_1347
Transcriptional regulator, IclR family; Identified by similarity to SP:P77569; match to protein family HMM PF09339.
       0.593
PFL_1344
Amidohydrolase; Identified by similarity to SP:P45493; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891.
       0.538
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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