Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PFL_1431 | PFL_1432 | PFL_1431 | PFL_1432 | Conserved hypothetical protein. | Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. | 0.802 |
PFL_1431 | phaG | PFL_1431 | PFL_1429 | Conserved hypothetical protein. | (R)-3-hydroxydecanoyl-ACP:CoA transacylase; Identified by similarity to SP:O85207; match to protein family HMM PF00561. | 0.428 |
PFL_1431 | rsuA | PFL_1431 | PFL_1430 | Conserved hypothetical protein. | Ribosomal small subunit pseudouridine synthase A; Identified by similarity to SP:P33918; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family. | 0.791 |
PFL_1432 | PFL_1431 | PFL_1432 | PFL_1431 | Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. | Conserved hypothetical protein. | 0.802 |
PFL_1432 | rsuA | PFL_1432 | PFL_1430 | Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. | Ribosomal small subunit pseudouridine synthase A; Identified by similarity to SP:P33918; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family. | 0.728 |
phaG | PFL_1431 | PFL_1429 | PFL_1431 | (R)-3-hydroxydecanoyl-ACP:CoA transacylase; Identified by similarity to SP:O85207; match to protein family HMM PF00561. | Conserved hypothetical protein. | 0.428 |
phaG | rsuA | PFL_1429 | PFL_1430 | (R)-3-hydroxydecanoyl-ACP:CoA transacylase; Identified by similarity to SP:O85207; match to protein family HMM PF00561. | Ribosomal small subunit pseudouridine synthase A; Identified by similarity to SP:P33918; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family. | 0.558 |
rsuA | PFL_1431 | PFL_1430 | PFL_1431 | Ribosomal small subunit pseudouridine synthase A; Identified by similarity to SP:P33918; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family. | Conserved hypothetical protein. | 0.791 |
rsuA | PFL_1432 | PFL_1430 | PFL_1432 | Ribosomal small subunit pseudouridine synthase A; Identified by similarity to SP:P33918; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family. | Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. | 0.728 |
rsuA | phaG | PFL_1430 | PFL_1429 | Ribosomal small subunit pseudouridine synthase A; Identified by similarity to SP:P33918; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; Belongs to the pseudouridine synthase RsuA family. | (R)-3-hydroxydecanoyl-ACP:CoA transacylase; Identified by similarity to SP:O85207; match to protein family HMM PF00561. | 0.558 |