STRINGSTRING
mucB mucB mucA mucA algU algU mucD mucD sigX sigX PFL_3298 PFL_3298 dinB dinB recO recO rseP rseP PFL_1458 PFL_1458 PFL_5072 PFL_5072
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
mucBSigma factor AlgU regulatory protein MucB; Identified by similarity to SP:P38108; match to protein family HMM PF03888. (318 aa)    
Predicted Functional Partners:
mucA
Sigma factor AlgU negative regulatory protein MucA; Identified by similarity to GB:AAK94007.1; match to protein family HMM PF03872; match to protein family HMM PF03873.
 
 
 0.997
algU
RNA polymerase sigma factor AlgU; See Schnider-Keel et. al. 2001 (PMID: 11722923); identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02939; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.932
mucD
Serine protease MucD; Might be efficient in the degradation of transiently denatured and unfolded proteins which accumulate in the periplasm following stress conditions.
  
  
 0.831
sigX
RNA polymerase sigma factor, ECF subfamily, SigX; Identified by similarity to GB:AAD34329.1; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.683
PFL_3298
Conserved hypothetical protein.
  
     0.672
dinB
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
      
 0.600
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
    0.583
rseP
RIP metalloprotease RseP; Identified by similarity to SP:P0AEH1; match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.
  
  
 0.518
PFL_1458
Putative lipoprotein.
  
     0.501
PFL_5072
Lipoprotein, LppC family; Identified by match to protein family HMM PF04348.
  
     0.499
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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