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PFL_1520 PFL_1520 PFL_0282 PFL_0282 PFL_3105 PFL_3105 arnT_1 arnT_1 arnT_2 arnT_2 PFL_0540 PFL_0540 PFL_3950 PFL_3950 PFL_1521 PFL_1521 cysK cysK PFL_3951 PFL_3951 oprB2 oprB2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PFL_1520Beta-hydroxylase, aspartyl/asparaginyl family; Identified by match to protein family HMM PF05118. (312 aa)    
Predicted Functional Partners:
PFL_0282
Putative membrane protein.
  
  
 0.919
PFL_3105
Beta-hydroxylase, aspartyl/asparaginyl family; Identified by match to protein family HMM PF05118.
  
  
 
0.905
arnT_1
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. Belongs to the glycosyltransferase 83 family.
     
 0.904
arnT_2
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase; Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. Belongs to the glycosyltransferase 83 family.
     
 0.904
PFL_0540
Putative lipoprotein.
  
     0.553
PFL_3950
Putative type I pili usher protein CsuD; Identified by similarity to GB:AAP43039.1; match to protein family HMM PF00577.
  
    0.524
PFL_1521
Putative membrane protein; Identified by match to protein family HMM PF00892.
 
     0.512
cysK
Cysteine synthase A; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; Belongs to the cysteine synthase/cystathionine beta- synthase family.
       0.493
PFL_3951
Putative type I pilus usher pathway chaperone CsuC; Identified by similarity to GB:AAP43038.1.
  
     0.477
oprB2
Carbohydrate-selective porin OprB; Identified by similarity to SP:Q51485; match to protein family HMM PF04966.
  
     0.443
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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