PFL_1537 protein (Pseudomonas protegens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PFL_1537

Transporter, major facilitator family; Identified by match to protein family HMM PF07690. (455 aa)

Predicted Functional Partners:

PFL_1536

0.770

PFL_0142

0.716

PFL_4126

0.698

PFL_0258

0.692

PFL_2048

0.681

emrA

0.658

PFL_0143

0.656

PFL_1538

0.558

PFL_5875

0.529

PFL_2541

0.444

Your Current Organism:

Pseudomonas protegens

NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFL_0142	PFL_0143	PFL_0142	PFL_0143	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	Auxiliary transport protein, membrane fusion protein family; Identified by match to protein family HMM PF00529.	0.958
PFL_0142	PFL_0258	PFL_0142	PFL_0258	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	Auxiliary transport protein, MFP family; Identified by match to protein family HMM PF00529.	0.818
PFL_0142	PFL_1537	PFL_0142	PFL_1537	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	0.716
PFL_0142	PFL_2048	PFL_0142	PFL_2048	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	Auxiliary transport protein, membrane fusion protein family; Identified by match to protein family HMM PF00529.	0.813
PFL_0142	PFL_2541	PFL_0142	PFL_2541	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	Auxiliary transport protein, membrane fusion protein family; Identified by match to protein family HMM PF00529.	0.687
PFL_0142	PFL_4126	PFL_0142	PFL_4126	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	Auxiliary transport protein, membrane fusion protein family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01409.	0.825
PFL_0142	emrA	PFL_0142	PFL_3917	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	Identified by similarity to SP:P27303; match to protein family HMM PF00529.	0.780
PFL_0143	PFL_0142	PFL_0143	PFL_0142	Auxiliary transport protein, membrane fusion protein family; Identified by match to protein family HMM PF00529.	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	0.958
PFL_0143	PFL_1537	PFL_0143	PFL_1537	Auxiliary transport protein, membrane fusion protein family; Identified by match to protein family HMM PF00529.	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	0.656
PFL_0258	PFL_0142	PFL_0258	PFL_0142	Auxiliary transport protein, MFP family; Identified by match to protein family HMM PF00529.	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	0.818
PFL_0258	PFL_1537	PFL_0258	PFL_1537	Auxiliary transport protein, MFP family; Identified by match to protein family HMM PF00529.	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	0.692
PFL_1536	PFL_1537	PFL_1536	PFL_1537	Conserved hypothetical protein.	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	0.770
PFL_1536	PFL_1538	PFL_1536	PFL_1538	Conserved hypothetical protein.	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.526
PFL_1537	PFL_0142	PFL_1537	PFL_0142	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	0.716
PFL_1537	PFL_0143	PFL_1537	PFL_0143	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	Auxiliary transport protein, membrane fusion protein family; Identified by match to protein family HMM PF00529.	0.656
PFL_1537	PFL_0258	PFL_1537	PFL_0258	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	Auxiliary transport protein, MFP family; Identified by match to protein family HMM PF00529.	0.692
PFL_1537	PFL_1536	PFL_1537	PFL_1536	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	Conserved hypothetical protein.	0.770
PFL_1537	PFL_1538	PFL_1537	PFL_1538	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.558
PFL_1537	PFL_2048	PFL_1537	PFL_2048	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	Auxiliary transport protein, membrane fusion protein family; Identified by match to protein family HMM PF00529.	0.681
PFL_1537	PFL_2541	PFL_1537	PFL_2541	Transporter, major facilitator family; Identified by match to protein family HMM PF07690.	Auxiliary transport protein, membrane fusion protein family; Identified by match to protein family HMM PF00529.	0.444

page 1 of 2

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About