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PFL_1539 PFL_1539 PFL_1538 PFL_1538 PFL_4586 PFL_4586 PFL_6005 PFL_6005 bpt bpt PFL_1537 PFL_1537 PFL_4990 PFL_4990
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1539Conserved hypothetical protein; Identified by match to protein family HMM PF04339. (374 aa)    
Predicted Functional Partners:
PFL_1538
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
       0.561
PFL_4586
Glutathione S-transferase; Identified by match to protein family HMM PF02798.
  
     0.490
PFL_6005
Glutathione S-transferase; Identified by similarity to SP:P82998; match to protein family HMM PF02798.
  
     0.480
bpt
arginine-tRNA-protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
 
     0.428
PFL_1537
Transporter, major facilitator family; Identified by match to protein family HMM PF07690.
       0.412
PFL_4990
Putative glutathione S-transferase; Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.
  
     0.405
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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