STRINGSTRING
PFL_1675 PFL_1675 PFL_1676 PFL_1676 cheA cheA aer_2 aer_2 aer_1 aer_1 aer_3 aer_3 PFL_5046 PFL_5046 PFL_4482 PFL_4482 cheZ cheZ PFL_6027 PFL_6027 PFL_2459 PFL_2459
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1675Identified by match to protein family HMM PF01584. (292 aa)    
Predicted Functional Partners:
PFL_1676
Identified by match to protein family HMM PF01584.
 
 
 0.984
cheA
Chemotaxis sensor histidine kinase CheA; Identified by similarity to GB:AAC08064.1; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895.
 
 0.978
aer_2
Aerotaxis receptor Aer; Identified by similarity to GB:AAD22405.1; match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.
 
 0.970
aer_1
Aerotaxis receptor Aer; Identified by similarity to GB:AAD22405.1; match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.
 
 0.967
aer_3
Aerotaxis receptor Aer; Identified by similarity to GB:AAD22405.1; match to protein family HMM PF00015; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229.
 
 0.965
PFL_5046
Methyl-accepting chemotaxis protein; Identified by similarity to GB:AAG04950.1; match to protein family HMM PF00015.
 
 0.963
PFL_4482
Response regulator receiver domain/CheW-like domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584.
 
 0.950
cheZ
Chemotaxis phosphatase CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
 
  
 0.949
PFL_6027
Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672.
  
 0.936
PFL_2459
Response regulator; Identified by match to protein family HMM PF00072.
 
  
 0.934
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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