STRINGSTRING
PFL_1738 PFL_1738 PFL_1106 PFL_1106 PFL_3308 PFL_3308 fitF fitF PFL_1645 PFL_1645 PFL_2954 PFL_2954 PFL_3251 PFL_3251 PFL_4239 PFL_4239 PFL_1105 PFL_1105 PFL_2516 PFL_2516 PFL_4057 PFL_4057
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_1738Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (633 aa)    
Predicted Functional Partners:
PFL_1106
Response regulator/EAL domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563.
 
 0.965
PFL_3308
GAF domain/diguanylate cyclase domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254.
  
 0.950
fitF
Sensory box sensor histidine kinase/response regulator FitF; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91232.1; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229.
 
 
0.940
PFL_1645
HPt domain protein; Identified by match to protein family HMM PF01627.
  
 0.933
PFL_2954
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
 
0.915
PFL_3251
CHASE3/GAF sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF05227.
 
 
0.913
PFL_4239
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.
 
 
0.904
PFL_1105
Sensory box histidine kinase/response regulator; Identified by similarity to SP:P16575; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229.
 
 
0.903
PFL_2516
Sensory box histidine kinase/response regulator; Identified by similarity to SP:P16575; match to protein family HMM PF00072; match to protein family HMM PF00497; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229.
 
 
0.903
PFL_4057
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229.
 
0.900
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.