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oprF oprF sigX sigX PFL_0316 PFL_0316 tolB tolB oprB oprB PFL_1185 PFL_1185 PFL_3366 PFL_3366 oprB2 oprB2 scrY scrY lamB lamB yaeT yaeT
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprFOuter membrane porin OprF; Identified by similarity to SP:P13794; match to protein family HMM PF00691; match to protein family HMM PF02462; match to protein family HMM PF05736. (325 aa)    
Predicted Functional Partners:
sigX
RNA polymerase sigma factor, ECF subfamily, SigX; Identified by similarity to GB:AAD34329.1; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.772
PFL_0316
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
   
 
 0.749
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.743
oprB
Carbohydrate-selective porin OprB; Identified by similarity to SP:Q51485; match to protein family HMM PF04966.
     
 0.674
PFL_1185
Outer membrane protein, Skp family; Identified by similarity to SP:P31519; match to protein family HMM PF03938.
 
 
 0.659
PFL_3366
Carbohydrate-selective porin, OprB family protein; Identified by match to protein family HMM PF04966.
     
 0.633
oprB2
Carbohydrate-selective porin OprB; Identified by similarity to SP:Q51485; match to protein family HMM PF04966.
     
 0.633
scrY
Sucrose porin ScrY; Identified by similarity to SP:P22340; match to protein family HMM PF02264.
     
 0.629
lamB
Maltoporin LamB; Identified by similarity to GB:AAN06916.1; match to protein family HMM PF02264.
     
 0.629
yaeT
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.602
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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